
(The server has completed structure and function predictions for
29534
proteins submitted by
6392 users from
82
countries) (Number of visitors: 159225)
I-TASSER is an Internet service for protein structure and function
predictions. Models are built based on multiple-threading alignments
by LOMETS and iterative TASSER simulations.
I-TASSER (as 'Zhang-Server')
was ranked as the No 1 server in recent CASP7 and CASP8 experiments.
The server is in active development with
the goal to provide accurate structural and function predictions
using state-of-the-art algorithms.
The server is only for non-commercial use.
Please send your questions and comments to zhanglab@ku.edu.
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If you need quicker responses, please submit your sequences to:
LOMETS (a multiple-threading server without structural refinement)
MUSTER (a single-threading server without structural refinement)
I-TASSER News (since January, 2009):
- 2009/01/10: Two new predictions were added in
the output page:
- Threading templates and the alignments which were
identified by LOMETS
and used by I-TASSER as initial input.
- Structural homologs of I-TASSER which are identified by structural
alignment program
TM-align
through the PDB library.
- 2009/03/16: Structure-based function predictions were developed
based on the global and local match of the predicted 3D models with
the known homolog and analog proteins. The function predictions
include ligand binding site, enzyme commission, and gene ontology.
- 2009/07/20: Added features to allow users to assign external
restraints
to guide the I-TASSER structural modeling. The user-specified information
includes:
- Residue-residue contact/distance information
- Specific template structures and alignments
More details can be found at
How to Add Restraints to I-TASSER Modeling.
- 2009/10/15: A new interface
Search
was added to allow users to search targets
and predictions through the I-TASSER database.
- 2009/10/17: A timer was added to the
Queue page to allow users track the implementation time of their
targets. A number of other changes were made in the Queue page for
improving the efficiency of retrieving I-TASSER output data.
- 2009/11/15:
Molecular Dynamic simulations were implemented on
I-TASSER models for removing steric clashes of side-chain atoms
and for further refining rotamer conformations.
References:
Yang Zhang.
I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, vol 9, 40 (2008).
( download the PDF file).
Yang Zhang.
Template-based modeling and free modeling by I-TASSER in CASP7.
Proteins, Suppl vol 8, 108-117 (2007)
( download the PDF file).
Sitao Wu, Jeffrey Skolnick, Yang Zhang.
Ab initio modeling of small proteins by iterative TASSER simulations.
BMC Biology, vol 5, 17 (2007).
( download the PDF file).
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