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I-TASSER results for job id S34332

  Submitted Sequence

>pUA140_p4
MTDSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDNDIT
IDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQFWKS

  Predicted Secondary Structure

Sequence                  20                  40                  60                  80                 100
                   |                   |                   |                   |                   |      
MTDSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQFWKS
PredictionCCCCCSSSSSSSCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCC
Conf.Score986602667764488788999999998387399999999871168544557437854031999999999965118999999999971533877182289987339

  Top 5 Models predicted by I-TASSER

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
C-score=-2.01
 C-score=-2.41
 C-score=-3.77
 C-score=-2.30
 C-score=-4.71
 
Estimated accuracy of Model1: 0.47±0.15 (TM-score)    8.3±4.5Å (RMSD)    (Read more about C-score of generated models)

  Top 10 templates used by I-TASSER

RankPDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100
                   |                   |                   |                   |                   |     
Sec.Str
Seq		CCCCCSSSSSSSCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHCC
MTDSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQFWKS
11y9bA 0.14 0.16 0.74 1.04Download ---TTLPRITARVDVDTQDLLAKAAALAG-SINSFVLNAAIEKAKQVIERE---QALKLSQADAVLL-EALDNPAVVNAKLKLASE-------------------
21y9bA 0.14 0.16 0.74 1.05Download --TTL-PRITARVDVDTQDLLAKAAALAG-SINSFVLNAAIEKAKQVIERE---QALKLSQADAVLL-EALDNPAVVNAKLKLASE-------------------
31u9pA 0.17 0.19 0.85 0.90Download MPQFNLRQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE---RIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI-------------
41u9pA 0.14 0.19 0.81 0.95Download RWPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQESFKKEGRIGG-----GGREVLDLVRKV-------AEENGRSVNSEIYQRV-MESFKKEG-------
51wqfA 0.13 0.15 0.85 0.79Download TNDGALIRVAVQLTEERRRELVKQAKH----KGEEAKVSVRNI-RRKAMEELHRKEGEAGEDEVGRAEKDLDTTHQYVTQIDELVKHKEGELLE-----------
61u9pA 0.15 0.19 0.83 0.75Download MWPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYMESFKKEGR-----IGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG-------------RI
71u9pA 0.14 0.19 0.86 0.88Download RWPGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFK--KEGRIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI-------------
81u9pA 0.15 0.19 0.78 0.98Download --PGGGPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQESFKKEGRIGG-----GGREVLDLVRKV-------AEENGRSVNSEIYQRVMESF-KKE--------
91zkeA 0.21 0.20 0.77 0.82Download --MFEKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIK----------RGSMDMPKGVNEAFFTQLSEEVERLKELINALNKIKKGLLV------------FGS
101y9bA 0.15 0.16 0.69 0.89Download --------ITARVDVDTQDLLAKAAALAG-SINSFVLNAAIEKAKQVIEREQA---LKLSQADAVLL-EALDNPAVVNAKLKLAS--------------------
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: HHSEARCH   2: HHSEARCH I   3: MUSTER   4: HHSEARCH   5: SP3   6: PROSPECT2   7: PPA-I   8: HHSEARCH I   9: FUGUE   10: HHSEARCH II   

  10 proteins in PDB which are structurally closest to the first I-TASSER model (identified by TM-align)

RankTM-scoreRMSDaIDENaCov.PDB
Hit
10.7490 1.57 0.16 0.851u9pA
Model1
 
20.5310 3.80 0.02 0.851ar1A
Model1
 
30.5280 3.80 0.02 0.791l5aA
Model1
 
40.5266 3.80 0.05 0.771xqoA
Model1
 
50.5209 3.11 0.08 0.742f5uA
Model1
 
60.5136 3.62 0.06 0.762jgpA
Model1
 
70.5122 4.16 0.06 0.812vsqA
Model1
 
80.5091 3.96 0.14 0.822g3mA
Model1
 
90.5060 3.93 0.05 0.811j7nA
Model1
 
100.5040 4.11 0.04 0.813ce2A
Model1
 
Structural alignment using TM-align
 
MPQFNLRWPGG-GPQFNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG--RIGGGGREVLDLVRKVAEENGRSVNSEIYQRVMESFKK-EGR------I------ 
------MT-DSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQFWKS 
 
GFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWMYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEAGYSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQQAYFMLA----------------------------------------TM--TI-A---V-----PTGIKVFSWIATMWGGSIEFKTPML-WAFGFLFLFTVGGVTGVVLSQAPLDRVY-HDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIGAYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFET 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTDSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDNDITIDIIDIL-------------R-EQV-SIKDEQIKELHHLLYNRDTKLLESPKHWWQF-----------------------------------------------------------W--K-S------------------------------------------------------------------------- 
 
MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVL----DGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSL---SYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDA-PWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHC---ERF-PRFFEQLL----AR-FQQ-V--EQDVARLLAEPAA-- 
---------------------------------------------------------------------------------------------------------------------------------MTDSKQ--------------------------------------------------------------------------------VQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSD------------------------------------------------------------------------NDIT----------------------------IDI--------------ID-------ILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQFW-----------KS 
 
AAESQLKRVIETLRRLGIEEVLKL------------ERRDP-QYRAVCNVVKRHGETVGSRLAMLNALISYRLTGKGEEHWEYFGKYFSQLEVIDLCRDFLKYIETSPFLK-IGVEARKKRALKACDYVPNLEDLGLTLRQLSHIVGARREQKTLVFTIKILNYAYMCSRGVNRVLPFDIPIPVDYRVARLTWCAGLIDFPPEEALRRYEAVQKIWDAVARETGIPPLHLDTLLWLAGRAVLY--G--E--NLHGVPKEVIALFQWRGGCRPP---- 
------------------------MTDSKQVQIIIRT-TKEEK--N----------------------------EIMEES----------------------------KE-KGV---S----------------------------------MN--E-------------------------FIKEKLFGSSKK-DINSD-I-ND--SDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPKHWWQ-------------------FWKS 
 
AEMEVQIVRNDPPLRYDTNLPVDLLHMVYAGRGATGSSG-VV--FGTWYRTIQDRTITD--FP-LTTRSADFRDG----RMSKTFMTALVLSLQACGRLYVNGNVYADRLNNRLQLGMLIPGAVSGSDSGAIKSGDNNLEALCANYVLPLYRADPAVELTQLFP-----G--LAALCLDAQ-AGRRRVVDMSSGARQAALVRLTAL--ELINRT-P-TPVGEVIHAHDALAIQYEQGLGLLAQQARIGLGSNTKRFSAFNVSSDYDMLYFLCLGFIPQYL----- 
---------------------------------------MTDSKQVQ--II--IR--TTKEEKNEIMEESK----EKGVSMNEFIKEKLFGSSKK-D--------------------------------------------------------------INSDINDSDNDITIDIIDILREQVS-------IKDEQIKELHHLL-YNRD-TKL-LESPKH-WW---------------------------------------------------------QFWKS 
 
RSEYVAPRSVWEARLAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETAKGNVFSIEPVQKQAYYPVSSAQKRMYILDQFEGVGISYNMPSTMLIEGKLERTRVEAAFQRLIARHESLRTSFAVVNGEPVQNIHEDVPFALAYSEVTEEEARELVSSLVQPFDLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILLAEWVQLYQGDVLPELRIQYKDFAVWQQEFSQSAAFHKQEAYWLQTFADDIPVLNLPTDFTRPSTQSFAGDQC---------TIGAGKALTEGLHQLAQATGTTLYMVLLAAYNVLLAKYAGQ-EDIIVGTPITGRSHADLEPIVGMFVNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFSATEEREEMTIG-VEYSTSLFTRET-M-ERFSRHFLTIAASIVQNPHIRLGEI------DML------ 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTDSKQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSDN--------------------------------------------------------------------------D-IT-------------------------------IDIID------------IL-R----EQVS-IKDEQIKELHHLLYNRDTKL--------LESPKHW--WQFWKS 
 
MSQFSKDQVQDMYYLSPMQEGMLFHAILNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLKKRQFHIEEIDLTHLTGSEQTAKINEYKEQDKIRGFDLTRDIPMRAAIFKKAEESFEWVWSYHHIIL---DGWCFGIVVQDLFKVYNALREQKPYSLPPVKPYKDYIKWLEKQDKQASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKE----LLFSPSEAETKAFTELAKSQHTTLSTALQAVWSVLISRYQQSGDLAFGTVVSGRPAEIKGVEHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQPKLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILR--LK-SQLLTAIQQ-L-IQNPDQPVST--INLVDDREREFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQDVTIMNQDQEQIIFAFPPVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFEAAKKLEEQGRIVQRIIMVDSYKKQGVSTVESDVEALMNVNREAVKHGLKQKTHAFYSYYVNQVKADIDLLTSGADFDIPEWLASWEEATTGVYRMKRGFGTHAEMLQGETLDRNAEILLEFLNTQTVTVSKGEFEAYVEQKLISE------ 
------------------------------------------------------------------------------------------------------------------------------------------------------MTDS-------------------------------------------------------------------------------KQVQIIIRTTKEEKNEIMEESKEKGVSMNEFIKEKLFGSSKKDINSDINDSD----------------------------------------------------------------------NDIT-----------------------------------IDI-----------I-D----ILREQVSIKDEQIKELHHLLYNRDTKLLES-----PKHW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WQFWKS 
 
ILKIYENKGVYKVVIGEPFPPIEFPLEQKISSNKSLSELGLTIVQQGNKVIVEKSLDLKEHIIGL-GEKAFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISVKDGVATGYFFNSASKVIFDVGLEEYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTELTGKPFLPPMWAFGYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFPEPKKLIDELHKRNVKLITIVDHGIRVDQNYSPFLSGMGKFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAGLISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLPVQFRDDRLVTTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNEIFILSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSHKATDGIDTEPVFLPDYYKEKVKEIVELRYKFLPYIYSLALEASEKGH--PVI-R--PLFYEFQDDDDMYRI------E--DEYMVGKYLLY-APIVSKEESRLVTLPRGKWYNYWNGEIINGKSVVKSTH----EL--P--IY--LREGSIIPLEGDE--LIVYGETSFKRYDNAEITSSSNEIKFSREIYVSKLTITSEKPVSKIIVDDSKEIQVEKTMQNTYVAKINQKIRGKINLE 
-----------------------------------------------------------------MTDSK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q------------V----------------Q-------------------------III--------------------------------R-TTKEEKNEIMEESKEKG--VSMNEFIKEKLFGS-SK--KDINSDINDSDNDITIDI---------IDIL-R-E-QV----------------------------SIKDEQIKELHHLLYNR-DTKL------LESPKHW------------------------------WQF------------------------WKS-------------- 
 
PKSKIDTKIQEAQLNINQEWNKALGLPKYTKLITFNVHNRYASNIVESAYLILNEWKNNIQSDLIKKVTNYLVDG-N---GRFVFTDITLPNIA-EQYTH---QDEI--YEQVHSKGLYVPESRSI-----LLHGP-SKG-VELR-NDSEGFIHEFGHAVD-D-YAGYLLDKNQSDLVTNSKKFIDIFKEEGSNLTSYGRTNEAEFFAEAFRLMHSTDHAERLKVQKNAPKTFQFINDQIKFI 
---------------------------------MTDSK---Q--VQ--I--II--RT--T-KEEKNEIMEESKEKGVSMNEFIK--------E-KLF---GSSK---KDINSDI------------NDSDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLLESPK------HW--------------------------------------------------------W-QFWKS- 
 
QVRPRSEISP--QDCWDITPLYLNRKAWKADLDSFGLKSPTWPALQATQYQLDNSESLLSLLTTLFSIERKLNKLYVYAHLTHDQDITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLEKIFRLSIHTGTPGEEKILASAFTPLEVASKAFSSLSDSEIPFGQATDSEGNSHPLSHALASLYMQSTDRELRKTSYLAQCERYHSYRHTFANLLNGKIQAHVFYAKNKRYNSCLQAALYHNNIPTTVYTNLIDIVKKNSSLITKYFSIKQRCLNLKDFHFYDVYAPLSQEKKY--TFQEAVDLIYTSLSPLGTEYID-TL------K-QGLTTQGWVDKYENLNKRSGAYSSGCYDSHPYVL-----------------LNYT-GT---LYDVSVIAHEGGHSMHSY-F-SRKHQPFHDAQYPIFLAEIASTLNEMLLMDSMLKESDSKEEKITILTRCLDTIFSTLFRQVLFASFEYDIHHAAEHGVPLTEEYLSSTYKNLQNEFYGEIITFDVLSNIEWARIPHFYYNFYVYQYATGIIAALCFLEKILNNEDNALNSYLNFLKSGGSDFPLEILKKSGLDMGTVEPIQKAFCFIEKKIQELSSLI 
----------MTD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKQVQ-II--I--RTTKEEKNEIMEESKEKGVSMNEFIK--EKLF---------------------GSSKKDINSDINDSDNDITIDIIDILREQVSIKDEQIKELHHLLYNRDTKLL--E----------------------------------------------------------------------------------------------------------------------------------------------------S--PKHW---W--QF-WK-S-------------------------- 
 
(a)Residue pairs that are structurally aligned by TM-align program are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade.(more about the colors used)
(b)Ranking of proteins is based on TM-score of the structural alignment between Model1 and the PDB structures in our template library.
(c)RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the model.

  Function Prediction

  Predicted EC Numbers

RankTM-scoreRMSDaIDENaCov.EC-ScorePDB
Hit		EC No.
10.3809 5.20 0.17 0.730.59231uaxA 3.1.26.4
 
20.3693 4.16 0.17 0.670.55161c4zD 6.3.2.19
 
30.4669 4.63 0.10 0.860.53531l1lB 1.17.4.2
 
40.4338 4.28 0.13 0.750.53141lnsA 3.4.14.11
 
50.4071 4.22 0.14 0.690.52503e47W 3.4.25.1
 
(a)Ranking is based on EC-score, which is a confidence score for the Enzyme Classification (EC) Number prediction.
(b)RMSDa is the RMSD between models and the PDB structure in the structurally aligned regions by TM-align.
(c)IDENa is percentage sequence identity in the structurally aligned region.
(d)Cov. represents the coverage of the alignment and is equal to the number of structurally aligned residues divided by length of model.
(e)EC-Score is defined based on the C-score of the structure prediction and similarity of the model with known enzyme structures, as identified using both global and local structural alignment programs. The global similarity score uses TM-score, IDENa,RMSDa and Cov. of the structural alignment by TM-align, while the local match compares the structural and chemical similarity of local spatial motifs in the model with known catalytic site of enzymes. A prediction with a EC-score >1.1 signifies a prediction with high confidence (upto 3 digit numbers of EC) and vice versa (For details, see Ambrish, Kucukural and Zhang,Large scale benchmarking of protein function prediction using predicted protein structures, 2009, submitted).

  Predicted GO terms

RankTMscoreRMSDaIDENaCov.PDB
Hit		Fh-ScoreAssociated GO Terms
10.7490 1.57 0.16 0.851u9pA 0.86 GO:0003677 GO:0016564 GO:0006139 GO:0009058 GO:0009889 GO:0009987 GO:0043283 GO:0044249 GO:0044260 GO:0050794 GO:0060255 GO:0065007
20.5092 3.94 0.14 0.822g3nF 0.62 GO:0004558 GO:0005975 GO:0005622 GO:0005623 GO:0005737
30.4408 3.95 0.15 0.731n2xB 0.58 GO:0008168 GO:0005622 GO:0005623 GO:0005737
40.3851 4.63 0.16 0.691h41B 0.54 GO:0043169 GO:0046559 GO:0007047 GO:0009056 GO:0043283 GO:0043285 GO:0044036 GO:0045491 GO:0045493 GO:0005576
50.4680 4.68 0.11 0.851l1lD 0.54 GO:0000166 GO:0008998 GO:0016960 GO:0031419 GO:0043169 GO:0050897 GO:0006260 GO:0009058 GO:0009987 GO:0034960 GO:0034961 GO:0043283 GO:0043284 GO:0044249 GO:0055114
60.4547 4.03 0.12 0.761k95A 0.54 GO:0005509 GO:0043169 GO:0006944 GO:0005622 GO:0005623 GO:0005737 GO:0005886
70.4241 3.79 0.14 0.681rt8A 0.54 GO:0005509 GO:0030674 GO:0043169 GO:0051015 GO:0000910 GO:0007049 GO:0009653 GO:0010926 GO:0019222 GO:0019953 GO:0022402 GO:0022607 GO:0030029 GO:0030154 GO:0032505 GO:0032506 GO:0034293 GO:0043283 GO:0043933 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0048519 GO:0048856 GO:0051128 GO:0060255 GO:0065008 GO:0005622 GO:0005623 GO:0005737 GO:0005826 GO:0005938 GO:0015629 GO:0030479 GO:0030482 GO:0030863 GO:0032153 GO:0032155 GO:0043229 GO:0044448
80.4135 4.20 0.14 0.691i0aD 0.53 GO:0004056 GO:0005212 GO:0006525 GO:0006526 GO:0008652 GO:0009058 GO:0009308 GO:0009309 GO:0009987 GO:0019752 GO:0042450 GO:0044249
90.4338 4.28 0.13 0.751lnsA 0.53 GO:0004177 GO:0008236 GO:0008239 GO:0006508 GO:0009987 GO:0034960 GO:0043283 GO:0044237 GO:0005622 GO:0005623 GO:0005737
100.4480 4.36 0.13 0.722eqoA 0.53 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0043229

Consensus Prediction of Gene Ontology terms 
Molecular Function  Biological Process Cellular Location
GO termGO-Score  GO termGO-Score GO termGO-Score
GO:00038240.387  GO:00081520.522  GO:00057370.490
GO:00054880.302  GO:00099870.513  GO:00444240.490
GO:00167870.222  GO:00442380.469  GO:00056230.490
GO:00431690.216  GO:00442370.405  GO:00444640.490
GO:00431670.216  GO:00431700.354  GO:00056220.490
GO:00468720.161  GO:00432830.354  GO:00432290.211
GO:00045530.117  GO:00442600.332  GO:00432260.211
GO:00167980.117  GO:00090580.245  GO:00444440.158
GO:00055090.108  GO:00442490.245  GO:00444220.106
GO:00082330.106  GO:00160430.162  GO:00432280.106

(a)Ranking in the first table is based on a function prediction score (Fh-score), which is calculated based on the C-score of the structure prediction and the TM-score, IDENa, RMSDa and Cov. of the structural alignment by TM-align between the predicted model and the PDB structures (For details, see Ambrish, Kucukural and Zhang,Large scale benchmarking of protein function prediction using predicted protein structures, 2009, submitted).
(b)RMSDa is the RMSD between models and the PDB structure in the structurally aligned regions by TM-align.
(c)IDENa is the percentage sequence identity in the structurally aligned region.
(d)Cov. represents the coverage of the alignment and is equal to the number of structurally aligned residues divided by length of model.
(e)A consensus prediction of GO terms is derived from the structural analogs that have an Fh-score of >=1.0. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on the Fh-score of the template from which the GO term is derived. A prediction with a GO-score >0.5 signifies a prediction with high confidence and vice versa.


  Predicted Binding Site


Binding site residues in the model:
MET:1  THR:2  ASP:3  VAL:7  GLN:8  ILE:9  ILE:10  
ILE:11  ARG:12  THR:13  GLU:17  MET:32  ASN:33  GLU:34  
PHE:35  ILE:36  LYS:37  LEU:40  ASP:56  ILE:63  LEU:67  
LYS:74  ASP:75  GLU:76  GLN:77  ILE:78  LYS:79  GLU:80  
LEU:81  HIS:82  
Identified analogs with similar binding site:

RankPDB
Hit		TM-scoreRMSDaIDENaCov.BS-scoreDownload
Complex		Binding site residues on the predicted model
12fy4A0.4506 3.67 0.10 0.68 0.84Download1,2,3,7,8,9,10,11,12,13,17,32,33,34,35,36,37,40,56,63,67,74,75,76,77,78,79,80,81,82
21hdsA0.4008 4.22 0.13 0.64 0.67Download1,2,3,5,6,7,9,11,36,37,40,44,48,51,52,54,55,56,57,58,59,60,61,62,63,64,66,67,78,81,82

(a)Ranking of the analogs in the table is based on their BS-score. BS-score is calculated by first finding the structural analogs of the predicted model based on their TM-score, IDENa and Cov. of the structural alignment. The ligand(s) in the analog structure are then transferred onto the model and the fitness of the ligand-model complex (BS-score) is calculated by comparing the local structure and sequence similarity in the binding site region. (For detail, see Kucukural, Szilagyi, Ambrish, and Zhang, Template based ligand binding site prediction on modeled protein structure, 2009, in preparation).
(b) A BS-score of >0.5 signifies a binding site prediction with high confidence and vice-versa.
(c)RMSDa the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the model.
(f)The image shows the ligand-protein complex with the best BS-score. The ligand is depicted in magenta colored ball & stick, the predicted binding site residues interacting with the ligand are shown as transparent green spheres, while the N & C terminus in the model are marked by blue and red spheres respectively.



 Please cite following articles when you use the I-TASSER server:
1.Yang Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9:40 (2008).
2.Yang Zhang. Template-based modeling and free modeling by I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3.Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biology, 5:17 (2007).