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I-TASSER results for job id S34337

  Submitted Sequence

>your_protein
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFG
ASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEP
LLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWL
HARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKM
KKMNKEQGKE

  Predicted Secondary Structure

Sequence                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |           
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
PredictionCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCSSSSSSCCCHHHHHHHHHHCCCC
Conf.Score9644145232424445775554565578888888877888888888874666888876799888777575788877678878888888888775667666666666777777888788777889887677787766777655677766567787666566677887554444455577666688987656750899999999987502115799999999759840124654201146788763210379

  Top 5 Models predicted by I-TASSER

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
C-score=-3.97
 C-score=-3.95
 C-score=-3.66
 C-score=-3.78
 C-score=-4.12
 
Estimated accuracy of Model1: 0.29±0.09 (TM-score)    15.5±3.3Å (RMSD)    (Read more about C-score of generated models)

  Top 10 templates used by I-TASSER

RankPDB
Hit		Iden1Iden2Cov.Norm.
Z-score		Download
Align.		                   20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240
                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |          
Sec.Str
Seq		CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCSSSSSSCCCHHHHHHHHHHCCCC
MSISGTLSSYYVDSIISHESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
11pufA 0.87 0.27 0.31 1.56Download ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK-
22eyzA 0.11 0.20 0.89 1.78Download MAGNGRLSRQEAVALLQGQRHGVFLVRDSSTSNSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTA----------------------------LALEVGELEGECNGKRRLLDQQNPEEDFS
31b72A 0.54 0.15 0.27 1.99Download --------------------------------------------------------------------------------------------------------------------------------------------------------ARTFDWMKV--------------------------LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE----
41m11R 0.09 0.18 0.89 1.76Download QPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGER----------------------------DHYGYRQSVTYAEHSIYCTVNNDEGEWS
52dmtA 0.36 0.13 0.32 2.40Download ------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSSGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSSG--
61pufA 0.86 0.27 0.31 1.83Download ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR-AK
71pufA 0.87 0.27 0.31 1.87Download ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK-
82r5yA 0.58 0.19 0.29 1.87Download ------------------------------------------------------------------------------------------------------------------------------------------------------------GKKNPPQIYPWMKRV----------------QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEHK-----
91bw5A 0.23 0.07 0.26 2.92Download --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMK--
101pufA 0.87 0.27 0.31 1.86Download ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK-
(a)All the residues are colored in black; however, those residues in template which are identical to the residue in the query sequence are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade. (more about the colors used)
(b)Rank of templates represents the top ten threading templates used by I-TASSER.
(c)Ident1 is the percentage sequence identity of the templates in the threading aligned region with the query sequence.
(d)Ident2 is the percentage sequence identity of the whole template chains with query sequence.
(e)Cov. represents the coverage of the threading alignment and is equal to the number of aligned residues divided by the length of query protein.
(f)Norm. Z-score is the normalized Z-score of the threading alignments. Alignment with a Normalized Z-score >1 mean a good alignment and vice versa.
(g)Download Align. provides the 3D structure of the aligned regions of the threading templates.
(h)The top 10 alignments reported above (in order of their ranking) are from the following threading programs:
       1: MUSTER   2: PROSPECT2   3: HHSEARCH   4: PROSPECT2   5: SP3   6: PROSPECT2   7: PPA-I   8: HHSEARCH I   9: FUGUE   10: HHSEARCH II   

  10 proteins in PDB which are structurally closest to the first I-TASSER model (identified by TM-align)

RankTM-scoreRMSDaIDENaCov.PDB
Hit
10.7477 2.82 0.07 0.852eyzA
Model1
 
20.4329 5.61 0.04 0.701gq2A
Model1
 
30.4306 5.94 0.06 0.741ehkA
Model1
 
40.4264 5.68 0.04 0.691gz4A
Model1
 
50.4107 5.64 0.03 0.661ocrA
Model1
 
60.4062 6.14 0.04 0.712g23A
Model1
 
70.4026 6.22 0.04 0.691jqoA
Model1
 
80.4020 5.65 0.05 0.662nz2A
Model1
 
90.4001 5.36 0.03 0.641vl2A
Model1
 
100.3998 6.54 0.05 0.721kcwA
Model1
 
Structural alignment using TM-align
 
MAGNFDSEERSSWYWGRLSRQ--EAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSHYII---NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVT----------K---INVSG--QWEGECNGKR---------------GH-FP-FTHVRLLDQQNPEEDFS 
-------MS-----ISGTL--SSYYVDSIISH---------------------ESEDAPPAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAPRGEAAPGQGQAAVKAEPLLGAPGEL-------------------------------LKQG-TPEYSLETSAGREAVLSNQRPGYGDNKICEGSEDKERPDQTNPSANWLHARSSRKKRCPYT------------KYQTLELEKEFLFNMYLTRDRR---------HEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE--- 
 
KKGYEVLRDPHLNKGAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLSLQDRNEKLFYKVLTSDIERFPIVYTPTVGLACQHYGLAFRRP------RGLFITIHDRGHIATLQ----------SWPESV-IKAIVVTDGERILGLGDLGCYGGIPVGKLALYTACGGVKPHQ-CLP---------V---LDVG--TDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFEAVT-----SRYG------------------------------------------------------NCLIQFEDFA-----------NANAFRLLHKYRNKYCTFNDDIQGTA--SVA--VAGLLAALRITKNRLSDHTVL-FQGAGEAALGIANLIVAQKEGVSKEEAIKRIWVDSKGLIVKGRASLTPEKEHFAHEHCEKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDAAFNKRPIIFA-LSNPTSKA-ECTAE--QLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGN-NSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFVADSYTWPEEAKVK 
---------------------------------------------------------------------------------------------------------MSISGTLSSYYVDSIIS------HESEDAPPAKFPSGQ-YASSRQ----------------------PGHAEHLEFPSCSFQPKAPVFGASWAPLSPHASGSLPSVYH----------PY--IQPQ---G--VPPA-----ESRYLR---TWLEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQ---------RPGYGDNKICEGSEDKERPD-QTN---PS----A---NWL--HARS--SRK-KRC---P--YTKYQTLE---LE-------------------------K-----------------------------------------EFLFN----------------------MYLTRDRRHEVAR--LLNLS-------ERQVK----------------IWFQNRRMKMKKMNKEQG--K----------------------------------------------------------E-------------------------------------- 
 
AYPEKKATLYFLV------LGFLAL------------------------IVGS--LFGPFQALNYGNVDAYPLL-----------KRLLPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLANEATVLYTFYPPLKGHWAFYLGASVFVLST------WVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLV-----ARTLFWWTGHPIV-YFWL-LPAYAIIY---TILP--KQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVPSLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVA--PVLGLLGFIPGGAGGIVNASFTLDYVVHNTAWVPGH----------FHLQVASLVTLTAMGSLYWLLPNLTGKPISDAQRRLGLAVVWLWFLGMM-------IM-AVGLHWAGLLNVPRR--AYIAQVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRLAEAPLPFAEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPGWRLW 
-----MS------ISGTLSS-----YYVDSIISHESEDAPPAKFPSGQYAS--SRQPGHA--------------EHLEFPSCSFQPKAPVFGASW-APLSPHASG------------------------------------------------------S-LPSVYH-PYIQP-QGVPPAE-----SRYLRTWLE--PAP---------------------R--G--EA--A-PGQ-GQAA---VK-------------AEPLLG-APG-EL--L--KQ---GTP-EY---SLETS--AGREAV--------------------------------------------------------------------------------------LSNQ--RPG-----------------------------------YGDNKICEGSED-KER--PDQTNPSA--------------------NWLHARS------SRKKRCPY-TKYQTLELEK-EFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQG--KE---------------------------------------------------------------- 
 
EKGKPLLNPRTNKGAFTLQERQLGLQGLLPPKIETQDIQALRFHRNLKKTSPLEKYIYIGIQERNEKLFYRILQDDIESLPIVYTPTVGLACSQYGHIFR----RPKGLFIS-ISDRGHVRSIVDNWPENHVKAVVVTD-----GERILGLGDLGVY-GGIPVGKLCLYTACAGIRPDRCLPVCIDV---------------------GTDNIALLKDPFYGLYQ---------------KRDRTQQYDDLIDEFKAI-TDRYGRNTLIQFEDFGNHNAFRFLR---------------------KY--------------------------------REKY-CTFN----DDIQ-GTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVSVENGLSEQEAQKK---IWFDKY-GLLVKGRK-AKIDSYQEPFTHSAPE-------------SIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKAFRYPEPEDKAKYVKERTWRSEYDSLLPDVYEWP 
---------M------------------------------------------------------------------------------------------SISGTLSSYYVDSIISHE---------------------SEDAPP--------AKFPSGQYA-SS----------------------RQPGHAEHLEFPSCSFQPKAPVFGASW-----------APLSPHASGSLPSVYHPYIQP-QG--V-PPAESRYLRTWLEP-----------------APRGEAAPGQGQAAVKAEPLLG-APGELLKQGTPEYSLETSAGREAVLSNQRPGYGDN-KICEGSEDKERPDQTNPSA-NWLH-ARS----------SRK------------------------------KRCPYT---KYQTLE-L-EKEFLFNM---------YLTRDRRHEVARLLNLSERQVKI----W--FQNRR-----------------------MKM-------------------------K------------------KMNKEQGK-----------------------------------------------E---------------------------------------------------- 
 
MFINRWLFSTNHKDIGTLYL-LFGA-WAG----------------------MVGTALSLL-IRAELGQPGTLLGD-------------DQIYNVVVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGV-------SS-ILGAINF-----------------------------ITTIINMKPPAMSQYQTPLFVWSVMITAVLLLL-SLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGI--VLANSSLDIVL--H------D----T--------------YYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 
-----------------MS-ISGT-LSS-YYVDSIISHESEDAPPAKFPSGQYASSRQP-GHAEH----------LEFPSCSFQPKAPVFGAS-WA--PL-SPH--------------------------------------------------------A-SGSLPS-VYH---PYI-QPQ--GVPPA----ESRYLRTW-LEPAPR--GEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSA--GR--EAVLS--NQR-PGY-GDNKICE-G--------------------------------SEDKERPDQTNPSA--N--------------------------------------------------------------------W-----------------------LHA--RSS-RK--KRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGK--E------------------------------------------------------------------------------------------------------------------------- 
 
APGELTPFAAPL-TVPPVLRPASDEVTRETEIALRP---TWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEPGRGGVEPNKDVAALPAWSVTHLHGAQTGGGNDGWADNAVGFGDAQLSEYPNDHQATQW---WYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIP-LLIAD--RNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPYA----DVDDGWYRLRLVNASNARIYNL--VLID--------------E---DDRPV-PGVVHQIGSDGG------------LLPRPVPVDFDDTLPV-LSAAPAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGS-FRRMSHDIPHGHR---LIV---LT-PP-GTKG-----------SGGHPEIWEMAEVEQVPA--EGVIQVTGADGRTKTYRRTAATFNDGLGFTIGEGTHEQWTFLNLSPILHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYGRFMYHCHLLEHEDMGMMRPFVVMPPEALKFD---- 
------------MSISGTLS----------------SYYVDSIISHESEDAPPAKFPS-----------------GQ--------------------------------------------------YAS--SRQPG--HAE--H-------LEFPSCS-------FQPKAPV-----F-GASW-APLSP---------------------HASGSLPSVYH----------PYI------------------------QPQGV-P--PAESRYLRTWLEPA---------------PRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEY--------SLETSAGREAVLSNQRPGYGDN--KICEGSEDKERPDQTN------------------------------------------------------------PSANWL--HARSSRKKRCPYTKYQTLELEK---EFLFNMYLTRDRRHEVAR-----------LLNL---------------SERQVK---------------I-W-F-----QNRRMKMKK------------------------------------------MN-------------KE-------------------------------------QGKE 
 
--------------IEYDALLVDRFLNILQDLHGPSLREFVQECYE---------------------------------VSADYEGKGDTTKLGELGAKLTGLAPADAILVASS----------ILHMLNLANLAEEVQIAHR-R-RNSDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRY----GMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPV-SPKPEWRKLMD---------------------------EMAVVATE----EYRSVVV--KEARFVEYFRSATPETEYGRMNIGSRPITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPG-IAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG 
MSISGTLSSYYVDSIISHESEDAP----------------------PAKFPSGQYASSRQPGHAEHLEFPSCSFQPKAPVFGA-SWAP--------------------------LSPHASGSLPSVYHPYIQP-QGV-PPAESRYLRTWL--EPA---------------------PRGEAA-----P---G--Q--GQ--AA-VKA--------------------------------------------EPLLGAPGE---L--------------------------------LK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QG-----------------------T--PEY--SLETSAGREAVLSN----QRPGYGDNKICEGSEDKERPDQTNPSANWL-----HARSS--RK--KRCP-YTKYQTLELE-K-----------------------EFLF-NM--------------------------------------------------YLTRDRRHEVARLLN-LSERQVKIWFQNRRMKMKKMNKEQGKE------------------------------------------------------------------------------------- 
 
KGSVVL------AYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARP------------CIARKQVEIAQREGAKYVSH------GATGKGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFK-RNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILEN-----------------------PKNQAPPGLYTKTQD---PAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGV-GR----IDI-VENRFIGMKSR---GIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGF-WHSPECE--F----V-RHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSNVQGDYEPTDATGFININSLRLKEYHRLQS---------------- 
------MSISGTLSSYY--VDSIISHE-SEDAPPAKFP-----------------------SGQYASSRQPGHAE------------------------HLEFPSCSFQPKAP--VFGASW----------APLSPHAS----GSLPSVYH----------PYIQPQ----G----VP--PA--E----SRYLRTWLEPA-------------PRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYS--------LETSAGREAV----------------------------------------LSNQRPGYGDNKICEGSEDK------ERPDQTNPSA-NWLHARS--SR--KKR--CPYT-KYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQ---------------------------------------------------------------NRRMKMKKMNKEQGKE 
 
KEKVVL------AYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARP------------LIAKRQVEIAEKEGAQYVAH------GATGKGNDQVRFELTYAALNPNLKVISPWKDPEFLAKFKT--DLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKL-E----------------------DPAHIPDEDVFTWTVS--------PKDAPDEETLLEIHFENGIPVKVVNLKDGTEKTDPLELFEYLNEVGAKN-GVGR----LDMV--ENRFIGIKSR---GVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFAELIYNGF-WFSPEME--F----LLAAFRKAQEN--VTGKVTVSIYKGNVMPVARYSPYSLYNPGGFDATDSKGFINIHALRLKVHQLVKKGYQR--------------- 
------MSISGTLSSYY--VDSIISHE-SEDAPPAKFP-----------------------SGQYASSRQPGHAE------------------------HLEFPSCSFQPKAP--VFGASW----------APLSPHAS----GSLPSVY--H--------PYIQPQ----------GVPPA--E----SRYLRTWLEPA-------------PRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYS--------LETSAGREAVLS------------------------------------------NQ-RP---GYGDNKICEGSEDK------ERPDQTNPSA-NWLHARS--SR--KKR--CPYT-KYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIW--FQN----------------------------------------------------------RRMKMKKMNKEQGKE 
 
KEKHYYIGIIETTWDYAS------------DHG--EKKLISVDT-EHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLGPIIKAETGDKVYVHLKNLASRPY----------TFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQESNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAG----LQAF-FQVQECI-RGKHVRHYYIAAEEIIWNYAPSGIDIFTKENLTAPGSDSAVFFEQGTTRIGGSYKKLVYREYTDASFTNRKERGPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFN-KNNEGTYYSPVPPSASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVDK------------EFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKEDEDFQESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQTSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQEQNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPRRKLEFALLFLVFDENESWY-LDDNIKTYSDHPEKVN---------------------KDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMGNEIDLHTVHFHGHSFQYKHRGVYSSDVFDIFPGTYQT-LEMFPRTPGIWLLHCHVTDHIHAGMETTYTVLQN-- 
------------------MSISGTLSSYYVD--SIISHES----ED-A---P--------PA---------------------KFPS-GQY----------------------ASSRQPGHAEHLEFPSC----------------------------------------------------SFQP-------------K-------------------------A-PVFGA-------------------------------S-----------------------------WA---PLSP-------------------HA--------------------SGSLPSVYHPYIQPQGVPPAESRYL-RTWL-EPAP--------------------------------------------------------------------------RGEA--------------APGQGQAA---------VKA-EP----------LLGAPG--------------------------------------ELLKQGTP---------EYSLETS--AGREAVLSNQRPGYGDN---------------------------------------------------------------KICEGSEDKER----------------------P-DQTNPS--------------A-----------------------------------------------------------------------------------------------------------------------------------------N-------------------------------------WL------------------H-------------ARSSRKKRCPYTK-YQ---------------TLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKI---------------------------WFQNRRMK--------------------MKKM--NKE-QG---------------------------------KE 
 
(a)Residue pairs that are structurally aligned by TM-align program are highlighted in color. Coloring scheme is based on the property of amino acids, where polar are brightly coloured while non-polar residues are colored in dark shade.(more about the colors used)
(b)Ranking of proteins is based on TM-score of the structural alignment between Model1 and the PDB structures in our template library.
(c)RMSDa is the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the model.

  Function Prediction

  Predicted EC Numbers

RankTM-scoreRMSDaIDENaCov.EC-ScorePDB
Hit		EC No.
10.3412 5.88 0.12 0.580.41983bhhB 2.7.11.17
 
20.3887 5.58 0.09 0.630.40981zzhC 1.11.1.5
 
30.3926 5.92 0.08 0.670.40611kp3A 6.3.4.5
 
40.3947 5.19 0.09 0.610.40152vhdB 1.11.1.5
 
50.3952 5.78 0.07 0.660.38963do6B 6.3.4.3
 
(a)Ranking is based on EC-score, which is a confidence score for the Enzyme Classification (EC) Number prediction.
(b)RMSDa is the RMSD between models and the PDB structure in the structurally aligned regions by TM-align.
(c)IDENa is percentage sequence identity in the structurally aligned region.
(d)Cov. represents the coverage of the alignment and is equal to the number of structurally aligned residues divided by length of model.
(e)EC-Score is defined based on the C-score of the structure prediction and similarity of the model with known enzyme structures, as identified using both global and local structural alignment programs. The global similarity score uses TM-score, IDENa,RMSDa and Cov. of the structural alignment by TM-align, while the local match compares the structural and chemical similarity of local spatial motifs in the model with known catalytic site of enzymes. A prediction with a EC-score >1.1 signifies a prediction with high confidence (upto 3 digit numbers of EC) and vice versa (For details, see Ambrish, Kucukural and Zhang,Large scale benchmarking of protein function prediction using predicted protein structures, 2009, submitted).

  Predicted GO terms

RankTMscoreRMSDaIDENaCov.PDB
Hit		Fh-ScoreAssociated GO Terms
10.1954 2.34 0.64 0.221pufA 0.46 GO:0003700 GO:0005515 GO:0016563 GO:0043565 GO:0002376 GO:0006139 GO:0007389 GO:0009058 GO:0009653 GO:0009790 GO:0009889 GO:0009987 GO:0043283 GO:0044249 GO:0044260 GO:0048856 GO:0050794 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0031974 GO:0043229 GO:0043234 GO:0044428
20.1886 2.03 0.64 0.219antB 0.44 GO:0003700 GO:0043565 GO:0002376 GO:0006139 GO:0007389 GO:0009058 GO:0009790 GO:0009889 GO:0009987 GO:0043283 GO:0044249 GO:0044260 GO:0048856 GO:0050794 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
30.1969 2.21 0.57 0.222h1kB 0.41 GO:0003700 GO:0043565 GO:0006139 GO:0009058 GO:0009889 GO:0009987 GO:0043283 GO:0044249 GO:0044260 GO:0050794 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
40.1927 2.31 0.56 0.221b8iA 0.40 GO:0003700 GO:0019904 GO:0043565 GO:0006139 GO:0007389 GO:0009058 GO:0009790 GO:0009791 GO:0009889 GO:0009987 GO:0010926 GO:0031323 GO:0035265 GO:0044237 GO:0044260 GO:0048589 GO:0048646 GO:0048856 GO:0048869 GO:0050794 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0031974 GO:0043229 GO:0043234 GO:0044424 GO:0044428
50.1959 2.66 0.48 0.222r5zA 0.36 GO:0003700 GO:0043565 GO:0000003 GO:0006139 GO:0007389 GO:0007548 GO:0009058 GO:0009790 GO:0009889 GO:0009987 GO:0010926 GO:0043283 GO:0044249 GO:0044260 GO:0048646 GO:0048856 GO:0050794 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
60.1973 2.18 0.47 0.221ig7A 0.35 GO:0003700 GO:0005515 GO:0016564 GO:0043565 GO:0007154 GO:0007275 GO:0008283 GO:0009058 GO:0009653 GO:0016265 GO:0019222 GO:0043170 GO:0044237 GO:0044238 GO:0048519 GO:0048856 GO:0050793 GO:0050794 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
70.1974 2.18 0.46 0.221jggB 0.34 GO:0003700 GO:0043565 GO:0009058 GO:0009653 GO:0010926 GO:0016043 GO:0032501 GO:0044237 GO:0048519 GO:0048869 GO:0051674 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
80.1962 2.34 0.46 0.221b72A 0.34 GO:0003700 GO:0019904 GO:0043565 GO:0006139 GO:0007389 GO:0009058 GO:0009790 GO:0009889 GO:0009987 GO:0010926 GO:0031323 GO:0044237 GO:0044260 GO:0048646 GO:0048857 GO:0050794 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0043229 GO:0044424
90.7477 2.82 0.07 0.852eyzA 0.32 GO:0042169 GO:0045309 GO:0006139 GO:0007154 GO:0007165 GO:0009058 GO:0009889 GO:0016043 GO:0030029 GO:0043283 GO:0044249 GO:0044260 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0043229
100.6166 2.12 0.08 0.672eyzA 0.29 GO:0042169 GO:0045309 GO:0006139 GO:0007154 GO:0007165 GO:0009058 GO:0009889 GO:0016043 GO:0030029 GO:0043283 GO:0044249 GO:0044260 GO:0060255 GO:0065007 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0043229

Consensus Prediction of Gene Ontology terms 
Molecular Function  Biological Process Cellular Location
GO termGO-Score  GO termGO-Score GO termGO-Score
GO:00054880.371  GO:00442600.404  GO:00432290.371
GO:00036770.310  GO:00090580.371  GO:00444240.371
GO:00305280.310  GO:00442370.371  GO:00056230.371
GO:00036760.310  GO:00081520.371  GO:00432310.371
GO:00435650.310  GO:00099870.371  GO:00432260.371
GO:00037000.310  GO:00507890.371  GO:00056340.371
GO:00055150.216  GO:00650070.371  GO:00444640.371
GO:00199040.135  GO:00507940.337  GO:00056220.371
GO:00421690.061  GO:00431700.337  GO:00432270.371
GO:00453090.061  GO:00442380.337  GO:00057370.107

(a)Ranking in the first table is based on a function prediction score (Fh-score), which is calculated based on the C-score of the structure prediction and the TM-score, IDENa, RMSDa and Cov. of the structural alignment by TM-align between the predicted model and the PDB structures (For details, see Ambrish, Kucukural and Zhang,Large scale benchmarking of protein function prediction using predicted protein structures, 2009, submitted).
(b)RMSDa is the RMSD between models and the PDB structure in the structurally aligned regions by TM-align.
(c)IDENa is the percentage sequence identity in the structurally aligned region.
(d)Cov. represents the coverage of the alignment and is equal to the number of structurally aligned residues divided by length of model.
(e)A consensus prediction of GO terms is derived from the structural analogs that have an Fh-score of >=1.0. The GO-Score associated with each prediction is defined as the average weight of the GO term, where the weights are assigned based on the Fh-score of the template from which the GO term is derived. A prediction with a GO-score >0.5 signifies a prediction with high confidence and vice versa.


  Predicted Binding Site


Binding site residues in the model:
GLN:38  PRO:39  GLY:40  HIS:41  GLU:43  ALA:56  TRP:63  
ALA:64  PRO:65  LEU:66  SER:184  SER:185  ARG:186  LYS:187  
TYR:209  ILE:231  PHE:233  GLN:234  ASN:235  ARG:236  ARG:237  
MET:238  LYS:239  MET:240  LYS:241  LYS:242  
Identified analogs with similar binding site:

RankPDB
Hit		TM-scoreRMSDaIDENaCov.BS-scoreDownload
Complex		Binding site residues on the predicted model
11gt8A0.3489 6.13 0.08 0.59 0.28Download38,39,40,41,43,56,63,64,65,66,184,185,186,187,209,231,233,234,235,236,237,238,239,240,241,242
21suoA0.3209 6.17 0.09 0.54 0.27Download39,41,56,63,64,65,66,68,69,70,71,168,209,237
31xv5A0.3181 6.38 0.08 0.56 0.26Download40,41,69,167,168,169,170,204,207,208,209,210,230,233,234,235,236,237,238,239,240,241
41hex_0.3328 6.22 0.07 0.55 0.25Download192,196,199,200,203,210,213,214,215,216,217,218,219,220,221,222,223,224,228,229,230,232,233
51nztA0.3495 5.50 0.07 0.55 0.20Download40,41,42,209,210,211,212,213,216,220,226,233,237
62v4wA0.3148 6.24 0.09 0.54 0.20Download40,41,42,43,44,69,168,204,207,208,209,210,211,212,215,230,233,234,236,237,240
71kp3A0.3926 5.92 0.08 0.65 0.20Download8,9,10,11,27,28,34,67,68,70,71,86,87
81up7A0.3534 6.20 0.05 0.61 0.18Download6,7,8,9,10,26,27,28,29,30,31,32,33,34,57,58,59,66,67
92pl3A0.3016 6.29 0.09 0.51 0.18Download24,25,73,74,75,76,77,78,79,80,81,82,83,84,85
101iqcA0.3895 5.37 0.07 0.60 0.17Download192,195,196,198,199,200,202,203,204,206,207,208,209,210,211,214,215,218,219,222,223,224,225,228,229,230,232,233

(a)Ranking of the analogs in the table is based on their BS-score. BS-score is calculated by first finding the structural analogs of the predicted model based on their TM-score, IDENa and Cov. of the structural alignment. The ligand(s) in the analog structure are then transferred onto the model and the fitness of the ligand-model complex (BS-score) is calculated by comparing the local structure and sequence similarity in the binding site region. (For detail, see Kucukural, Szilagyi, Ambrish, and Zhang, Template based ligand binding site prediction on modeled protein structure, 2009, in preparation).
(b) A BS-score of >0.5 signifies a binding site prediction with high confidence and vice-versa.
(c)RMSDa the RMSD between residues that are structurally aligned by TM-align.
(d)IDENa is the percentage sequence identity in the structurally aligned region.
(e)Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the model.
(f)The image shows the ligand-protein complex with the best BS-score. The ligand is depicted in magenta colored ball & stick, the predicted binding site residues interacting with the ligand are shown as transparent green spheres, while the N & C terminus in the model are marked by blue and red spheres respectively.



 Please cite following articles when you use the I-TASSER server:
1.Yang Zhang. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics, 9:40 (2008).
2.Yang Zhang. Template-based modeling and free modeling by I-TASSER in CASP7. Proteins, 8: 108-117 (2007).
3.Sitao Wu, Jeffrey Skolnick, Yang Zhang. Ab initio modeling of small proteins by iterative TASSER simulations. BMC Biology, 5:17 (2007).